A community effort listing of reproducible research via open source software, open access to data and results, and open standards for interchange. [FREE]
A library of tools for constructing maximum entropy (maxent) model in either python or C++. Some program features are L-BFGS and GIS parameter estimation, and gaussian prior smoothing. [GPL]
Programmatically isolate similarities between scattered classes of genes. Expression driven. Utilizes a voting method along with a k-Nearest-Neighbors classification. Very rich graphical interface. Samples of an unknown class are possible given enough...
Software for counting and analyzing word n-grams in text. This package provides standard tests of association for identifying word n-grams in large corpora and allows users to implement other tests with minimal scripting knowledge. Written in Perl. [GPL]
Programs to cluster similar contexts together using unsupervised knowledge-lean methods for word sense discrimination, email categorization, and name discrimination. Written in Perl. [GNU]